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Package Hierarchies:
org.jmol.adapter.readers.cifpdb
,
org.jmol.adapter.readers.molxyz
,
org.jmol.adapter.readers.more
,
org.jmol.adapter.readers.quantum
,
org.jmol.adapter.readers.simple
,
org.jmol.adapter.readers.xml
,
org.jmol.adapter.readers.xtal
,
org.jmol.adapter.smarter
,
org.jmol.api
,
org.jmol.applet
,
org.jmol.appletwrapper
,
org.jmol.atomdata
,
org.jmol.bspt
,
org.jmol.console
,
org.jmol.export
,
org.jmol.export.dialog
,
org.jmol.export.history
,
org.jmol.export.image
,
org.jmol.g3d
,
org.jmol.geodesic
,
org.jmol.i18n
,
org.jmol.jvxl.api
,
org.jmol.jvxl.calc
,
org.jmol.jvxl.data
,
org.jmol.jvxl.readers
,
org.jmol.minimize
,
org.jmol.minimize.forcefield
,
org.jmol.modelkit
,
org.jmol.modelset
,
org.jmol.modelsetbio
,
org.jmol.multitouch
,
org.jmol.multitouch.jni
,
org.jmol.multitouch.sparshui
,
org.jmol.popup
,
org.jmol.quantum
,
org.jmol.script
,
org.jmol.shape
,
org.jmol.shapebio
,
org.jmol.shapespecial
,
org.jmol.shapesurface
,
org.jmol.smiles
,
org.jmol.symmetry
,
org.jmol.util
,
org.jmol.viewer
,
org.jmol.viewer.binding
,
org.openscience.jmol.app
,
org.openscience.jmol.app.jmolpanel
,
org.openscience.jmol.app.webexport
,
org.openscience.jvxl
,
org.openscience.jvxl.simplewriter
Class Hierarchy
java.lang.Object
org.jmol.export.
___Exporter
org.jmol.export.
__CartesianExporter
org.jmol.export.
_IdtfExporter
org.jmol.export.
_MayaExporter
org.jmol.export.
_VrmlExporter
org.jmol.export.
_X3dExporter
org.jmol.export.
__RayTracerExporter
org.jmol.export.
_PovrayExporter
org.jmol.export.
_TachyonExporter
org.openscience.jmol.app.jmolpanel.
AboutDialog.PageLoader
(implements java.lang.Runnable)
javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
org.openscience.jmol.app.jmolpanel.
DisplayPanel.CheckBoxMenuItemAction
org.openscience.jmol.app.jmolpanel.
DisplayPanel.DefineCenterAction
org.openscience.jmol.app.jmolpanel.
DisplayPanel.HomeAction
org.openscience.jmol.app.jmolpanel.
DisplayPanel.MoveToAction
org.openscience.jmol.app.jmolpanel.
DisplayPanel.SetStatusAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.AboutAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.AtomSetChooserAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.CloseAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ConsoleAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.CopyImageAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.CopyScriptAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ExecuteScriptAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ExitAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ExportAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.GaussianAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.NewAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.OpenAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.OpenUrlAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.NewwinAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.PasteClipboardAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.PovrayAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.PrintAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.RecentFilesAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ResizeAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ScriptEditorAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ScriptWindowAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ToWebAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.UguideAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.ViewMeasurementTableAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.WhatsNewAction
org.openscience.jmol.app.jmolpanel.
JmolPanel.WriteAction
org.openscience.jmol.app.jmolpanel.
PreferencesDialog.PrefsAction
java.util.AbstractCollection<E> (implements java.util.Collection<E>)
java.util.AbstractList<E> (implements java.util.List<E>)
java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
org.jmol.export.image.
GifEncoder.ColorVector
javax.swing.text.AbstractDocument (implements javax.swing.text.Document, java.io.Serializable)
javax.swing.text.DefaultStyledDocument (implements javax.swing.text.StyledDocument)
org.openscience.jmol.app.jmolpanel.
AppConsole.ConsoleDocument
org.jmol.console.
ScriptEditor.EditorDocument
javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
org.openscience.jmol.app.jmolpanel.
MeasurementTable.MeasurementTableModel
org.jmol.viewer.
ActionManager
org.jmol.multitouch.
ActionManagerMT
(implements org.jmol.multitouch.
JmolMultiTouchClient
)
org.jmol.viewer.
ActionManager.Gesture
org.jmol.viewer.
ActionManager.HoverWatcher
(implements java.lang.Runnable)
org.jmol.viewer.
ActionManager.MotionPoint
org.jmol.viewer.
ActionManager.Mouse
org.jmol.adapter.readers.quantum.
AdfReader.SymmetryData
org.jmol.modelsetbio.
AminoPolymer.Bridge
org.jmol.viewer.
AnimationManager
org.openscience.jmol.app.webexport.
ArrayListTransferHandler.ListTransferable
(implements java.awt.datatransfer.Transferable)
org.jmol.util.
ArrayUtil
org.openscience.jvxl.simplewriter.
ASimpleJvxlWriter
org.jmol.modelset.
AtomCollection
org.jmol.modelset.
BondCollection
org.jmol.modelset.
ModelCollection
org.jmol.modelset.
ModelSet
org.jmol.modelset.
ModelLoader
org.jmol.modelset.
AtomCollection.AtomSorter
(implements java.util.Comparator<T>)
org.jmol.atomdata.
AtomData
org.jmol.modelset.
AtomIteratorWithinModel
(implements org.jmol.api.
AtomIndexIterator
)
org.jmol.adapter.smarter.
AtomSetCollection
org.jmol.adapter.smarter.
AtomSetCollectionReader
org.jmol.adapter.readers.xtal.
AimsReader
org.jmol.adapter.readers.simple.
AlchemyReader
org.jmol.adapter.readers.simple.
AmpacReader
org.jmol.adapter.readers.quantum.
BasisFunctionReader
org.jmol.adapter.readers.quantum.
MOReader
org.jmol.adapter.readers.quantum.
GamessReader
org.jmol.adapter.readers.quantum.
GamessUKReader
org.jmol.adapter.readers.quantum.
GamessUSReader
org.jmol.adapter.readers.quantum.
GaussianReader
org.jmol.adapter.readers.quantum.
GenNBOReader
org.jmol.adapter.readers.quantum.
JaguarReader
org.jmol.adapter.readers.quantum.
PsiReader
org.jmol.adapter.readers.quantum.
QchemReader
org.jmol.adapter.readers.quantum.
SlaterReader
org.jmol.adapter.readers.quantum.
AdfReader
org.jmol.adapter.readers.quantum.
DgridReader
org.jmol.adapter.readers.quantum.
MopacSlaterReader
org.jmol.adapter.readers.quantum.
CsfReader
org.jmol.adapter.readers.quantum.
MoldenReader
org.jmol.adapter.readers.quantum.
MopacGraphfReader
org.jmol.adapter.readers.quantum.
WebMOReader
org.jmol.adapter.readers.xtal.
CastepReader
org.jmol.adapter.readers.cifpdb.
CifReader
(implements org.jmol.api.
JmolLineReader
)
org.jmol.adapter.readers.xtal.
CrystalReader
org.jmol.adapter.readers.simple.
CubeReader
org.jmol.adapter.readers.simple.
FoldingXyzReader
org.jmol.adapter.readers.more.
ForceFieldReader
org.jmol.adapter.readers.more.
MdTopReader
org.jmol.adapter.readers.more.
Mol2Reader
org.jmol.adapter.readers.quantum.
GaussianWfnReader
org.jmol.adapter.readers.simple.
GhemicalMMReader
org.jmol.adapter.readers.more.
GromacsReader
org.jmol.adapter.readers.simple.
HyperChemReader
org.jmol.adapter.readers.simple.
JmeReader
org.jmol.adapter.readers.more.
MdCrdReader
org.jmol.adapter.readers.molxyz.
MolReader
org.jmol.adapter.readers.simple.
MopacReader
org.jmol.adapter.readers.quantum.
NWChemReader
org.jmol.adapter.readers.cifpdb.
PdbReader
org.jmol.adapter.readers.cifpdb.
PqrReader
org.jmol.adapter.readers.xtal.
ShelxReader
org.jmol.adapter.readers.quantum.
SpartanInputReader
org.jmol.adapter.readers.quantum.
OdysseyReader
org.jmol.adapter.readers.quantum.
SpartanSmolReader
org.jmol.adapter.readers.quantum.
SpartanReader
org.jmol.adapter.readers.xtal.
Wien2kReader
org.jmol.adapter.readers.xml.
XmlReader
org.jmol.adapter.readers.xml.
XmlArgusReader
org.jmol.adapter.readers.xml.
XmlChem3dReader
org.jmol.adapter.readers.xml.
XmlCmlReader
org.jmol.adapter.readers.xml.
XmlMolproReader
org.jmol.adapter.readers.xml.
XmlOdysseyReader
org.jmol.adapter.readers.xml.
XmlVaspReader
org.jmol.adapter.readers.xml.
XmlXsdReader
org.jmol.adapter.readers.molxyz.
XyzReader
org.jmol.export.image.
AviCreator
(implements org.jmol.api.
JmolMovieCreatorInterface
)
org.jmol.util.
Base64
org.jmol.util.
BinaryDocument
org.jmol.util.
CompoundDocument
org.jmol.viewer.binding.
Binding
org.jmol.viewer.binding.
JmolBinding
org.jmol.viewer.binding.
DragBinding
org.jmol.viewer.binding.
PfaatBinding
org.jmol.viewer.binding.
RasmolBinding
org.jmol.shapebio.
BioShape
java.util.BitSet (implements java.lang.Cloneable, java.io.Serializable)
org.jmol.modelset.
Bond.BondSet
org.jmol.util.
BitSetUtil
org.jmol.adapter.smarter.
Bond
org.jmol.modelset.
Bond
(implements org.jmol.api.
JmolEdge
)
org.jmol.modelset.
HBond
org.jmol.modelset.
BondIteratorSelected
(implements org.jmol.modelset.
BondIterator
)
org.jmol.modelset.
BoxInfo
org.jmol.bspt.
Bspf
org.jmol.bspt.
Bspt
org.jmol.minimize.forcefield.
Calculation
org.jmol.minimize.forcefield.
CalculationsUFF.AngleCalc
org.jmol.minimize.forcefield.
CalculationsUFF.DistanceCalc
org.jmol.minimize.forcefield.
CalculationsUFF.OOPCalc
org.jmol.minimize.forcefield.
CalculationsUFF.PairCalc
org.jmol.minimize.forcefield.
CalculationsUFF.ESCalc
org.jmol.minimize.forcefield.
CalculationsUFF.VDWCalc
org.jmol.minimize.forcefield.
CalculationsUFF.TorsionCalc
org.jmol.minimize.forcefield.
Calculations
org.jmol.minimize.forcefield.
CalculationsUFF
org.jmol.modelset.
Chain
org.jmol.util.
CifDataReader
org.jmol.g3d.
Circle3D
org.jmol.g3d.
Colix3D
org.jmol.util.
ColorEncoder
org.jmol.viewer.
ColorManager
org.jmol.util.
CommandHistory
java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
java.awt.Container
javax.swing.JComponent (implements java.io.Serializable)
javax.swing.AbstractButton (implements java.awt.ItemSelectable, javax.swing.SwingConstants)
javax.swing.JMenuItem (implements javax.accessibility.Accessible, javax.swing.MenuElement)
org.jmol.applet.
AppletConsole.KeyJMenuItem
(implements org.jmol.applet.
AppletConsole.GetKey
)
org.openscience.jmol.app.jmolpanel.
GuiMap.KeyJMenuItem
(implements org.openscience.jmol.app.jmolpanel.
GuiMap.GetKey
)
javax.swing.JCheckBoxMenuItem (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
org.openscience.jmol.app.jmolpanel.
GuiMap.KeyJCheckBoxMenuItem
(implements org.openscience.jmol.app.jmolpanel.
GuiMap.GetKey
)
javax.swing.JMenu (implements javax.accessibility.Accessible, javax.swing.MenuElement)
org.jmol.applet.
AppletConsole.KeyJMenu
(implements org.jmol.applet.
AppletConsole.GetKey
)
org.openscience.jmol.app.jmolpanel.
GuiMap.KeyJMenu
(implements org.openscience.jmol.app.jmolpanel.
GuiMap.GetKey
)
javax.swing.JRadioButtonMenuItem (implements javax.accessibility.Accessible)
org.openscience.jmol.app.jmolpanel.
GuiMap.KeyJRadioButtonMenuItem
(implements org.openscience.jmol.app.jmolpanel.
GuiMap.GetKey
)
javax.swing.JToggleButton (implements javax.accessibility.Accessible)
javax.swing.JCheckBox (implements javax.accessibility.Accessible)
org.openscience.jmol.app.jmolpanel.
GuiMap.KeyJCheckBox
(implements org.openscience.jmol.app.jmolpanel.
GuiMap.GetKey
)
javax.swing.JFileChooser (implements javax.accessibility.Accessible)
org.jmol.export.dialog.
FileChooser
javax.swing.JLabel (implements javax.accessibility.Accessible, javax.swing.SwingConstants)
org.openscience.jmol.app.webexport.
WebPanel.InstanceCellRenderer
(implements javax.swing.ListCellRenderer)
javax.swing.JPanel (implements javax.accessibility.Accessible)
org.jmol.export.dialog.
Dialog
(implements org.jmol.api.
JmolDialogInterface
)
org.openscience.jmol.app.jmolpanel.
DisplayPanel
(implements java.awt.event.ComponentListener, org.jmol.api.
JmolFrame
, java.awt.print.Printable)
org.jmol.export.dialog.
FilePreview
(implements java.beans.PropertyChangeListener)
org.jmol.export.dialog.
FilePreview.FPPanel
org.openscience.jmol.app.jmolpanel.
FileTyper
(implements java.awt.event.ItemListener, java.beans.PropertyChangeListener)
org.openscience.jmol.app.jmolpanel.
JmolPanel
(implements org.openscience.jmol.app.
SplashInterface
)
org.openscience.jmol.app.
Jmol
org.openscience.jmol.app.webexport.
Molecules
(implements java.awt.event.ActionListener)
org.openscience.jmol.app.webexport.
Orbitals
(implements java.awt.event.ActionListener)
org.openscience.jmol.app.jmolpanel.
StatusBar
org.openscience.jmol.app.webexport.
Test
(implements java.awt.event.ActionListener)
org.openscience.jmol.app.webexport.
WebExport
(implements java.awt.event.WindowListener)
org.openscience.jmol.app.webexport.
WebMaker
org.openscience.jmol.app.webexport.
WebPanel
(implements java.awt.event.ActionListener, java.awt.event.ItemListener, javax.swing.event.ListSelectionListener)
org.openscience.jmol.app.webexport.
PopInJmol
(implements javax.swing.event.ChangeListener)
org.openscience.jmol.app.webexport.
ScriptButtons
javax.swing.text.JTextComponent (implements javax.accessibility.Accessible, javax.swing.Scrollable)
javax.swing.JEditorPane
javax.swing.JTextPane
org.openscience.jmol.app.jmolpanel.
AppConsole.ConsoleTextPane
org.jmol.console.
ScriptEditor.EditorTextPane
javax.swing.JTextArea
org.jmol.applet.
AppletConsole.ControlEnterTextArea
org.openscience.jmol.app.jmolpanel.
ConsoleTextArea
java.awt.Panel (implements javax.accessibility.Accessible)
java.applet.Applet
org.jmol.appletwrapper.
AppletWrapper
java.awt.Window (implements javax.accessibility.Accessible)
java.awt.Dialog
javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
org.openscience.jmol.app.jmolpanel.
AboutDialog
(implements javax.swing.event.HyperlinkListener)
org.openscience.jmol.app.jmolpanel.
GaussianDialog
(implements java.awt.event.ActionListener, javax.swing.event.ChangeListener)
org.openscience.jmol.app.jmolpanel.
HelpDialog
(implements javax.swing.event.HyperlinkListener)
org.jmol.console.
JmolConsole
(implements java.awt.event.ActionListener, java.awt.event.WindowListener)
org.openscience.jmol.app.jmolpanel.
AppConsole
(implements org.openscience.jmol.app.jmolpanel.
EnterListener
, org.jmol.api.
JmolAppConsoleInterface
)
org.jmol.applet.
AppletConsole
(implements org.jmol.api.
JmolAppConsoleInterface
)
org.openscience.jmol.app.jmolpanel.
MeasurementTable
org.jmol.modelkit.
ModelKit
(implements org.jmol.api.
JmolModelKitInterface
)
org.openscience.jmol.app.jmolpanel.
PovrayDialog
org.openscience.jmol.app.jmolpanel.
PreferencesDialog
(implements java.awt.event.ActionListener)
org.openscience.jmol.app.jmolpanel.
RecentFilesDialog
(implements java.awt.event.ActionListener, java.awt.event.WindowListener)
org.jmol.console.
ScriptEditor
(implements java.awt.event.ActionListener, org.jmol.api.
JmolScriptEditorInterface
)
org.openscience.jmol.app.jmolpanel.
WhatsNewDialog
(implements javax.swing.event.HyperlinkListener)
java.awt.Frame (implements java.awt.MenuContainer)
javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
org.openscience.jmol.app.jmolpanel.
AtomSetChooser
(implements java.awt.event.ActionListener, javax.swing.event.ChangeListener, java.beans.PropertyChangeListener, java.lang.Runnable, javax.swing.event.TreeSelectionListener)
org.jmol.util.
JpegEncoder
org.openscience.jmol.app.jmolpanel.
Splash
(implements org.openscience.jmol.app.
SplashInterface
)
org.jmol.util.
CompoundDocument.CmpDocDirectoryEntry
org.jmol.util.
CompoundDocument.CmpDocHeader
org.jmol.bspt.
CubeIterator
org.jmol.g3d.
Cylinder3D
org.jmol.viewer.
DataManager
org.jmol.util.
DCT
org.xml.sax.helpers.DefaultHandler (implements org.xml.sax.ContentHandler, org.xml.sax.DTDHandler, org.xml.sax.EntityResolver, org.xml.sax.ErrorHandler)
org.jmol.adapter.readers.xml.
XmlReader.JmolXmlHandler
(implements org.xml.sax.ErrorHandler)
org.jmol.adapter.readers.xml.
XmlArgusReader.ArgusHandler
org.jmol.adapter.readers.xml.
XmlChem3dReader.Chem3dHandler
org.jmol.adapter.readers.xml.
XmlCmlReader.CmlHandler
org.jmol.adapter.readers.xml.
XmlMolproReader.MolproHandler
org.jmol.adapter.readers.xml.
XmlOdysseyReader.OdysseyHandler
org.jmol.adapter.readers.xml.
XmlVaspReader.VaspHandler
org.jmol.adapter.readers.xml.
XmlXsdReader.XsdHandler
org.jmol.util.
DefaultLogger
(implements org.jmol.util.
LoggerInterface
)
javax.swing.tree.DefaultMutableTreeNode (implements java.lang.Cloneable, javax.swing.tree.MutableTreeNode, java.io.Serializable)
org.openscience.jmol.app.jmolpanel.
AtomSetChooser.AtomSet
org.jmol.export.dialog.
Dialog.ExportChoiceListener
(implements java.awt.event.ItemListener)
org.jmol.export.dialog.
Dialog.QualityListener
(implements javax.swing.event.ChangeListener)
java.util.Dictionary<K,V>
java.util.Hashtable<K,V> (implements java.lang.Cloneable, java.util.Map<K,V>, java.io.Serializable)
org.jmol.export.
UseTable
org.jmol.shapespecial.
Dipole
org.jmol.util.
Eigen
org.jmol.bspt.
Element
org.jmol.bspt.
Leaf
org.jmol.bspt.
Node
org.jmol.util.
Elements
org.jmol.shapespecial.
Ellipsoids.Ellipsoid
org.jmol.geodesic.
EnvelopeCalculation
org.jmol.util.
Escape
org.jmol.export.
Export3D
(implements org.jmol.api.
JmolRendererInterface
)
org.jmol.util.
FastBitSet
(implements java.lang.Cloneable)
org.jmol.minimize.forcefield.
FFParam
javax.swing.filechooser.FileFilter
org.jmol.export.dialog.
Dialog.TypeFilter
org.jmol.viewer.
FileManager
org.jmol.viewer.
FileManager.DOMReader
org.jmol.viewer.
FileManager.FileReader
org.jmol.viewer.
FileManager.FilesReader
(implements org.jmol.api.
JmolFileReaderInterface
)
org.openscience.jvxl.
FileReader
org.jmol.g3d.
Font3D
org.jmol.minimize.forcefield.
ForceField
org.jmol.minimize.forcefield.
ForceFieldUFF
org.jmol.geodesic.
Geodesic
org.jmol.export.image.
GifEncoder.AdaptiveColorCollection
org.jmol.export.image.
GifEncoder.ColorItem
org.jmol.export.image.
GifEncoder.ColorVector.CountComparator
(implements java.util.Comparator<T>)
org.jmol.g3d.
Graphics3D
(implements org.jmol.api.
JmolRendererInterface
)
org.jmol.g3d.
Graphics3D.Pixel
org.jmol.g3d.
Graphics3D.ShadePixel
org.jmol.modelset.
Group
org.jmol.modelsetbio.
Monomer
org.jmol.modelsetbio.
AlphaMonomer
org.jmol.modelsetbio.
AminoMonomer
org.jmol.modelsetbio.
CarbohydrateMonomer
org.jmol.modelsetbio.
PhosphorusMonomer
org.jmol.modelsetbio.
NucleicMonomer
org.jmol.i18n.
GT
org.jmol.i18n.
GT.Language
org.openscience.jmol.app.jmolpanel.
GuiMap
org.jmol.symmetry.
HallInfo
org.jmol.symmetry.
HallInfo.RotationTerm
org.openscience.jmol.app.jmolpanel.
HelpDialog.PageLoader
(implements java.lang.Runnable)
org.jmol.g3d.
Hermite3D
org.jmol.export.history.
HistoryFile
org.jmol.util.
Huffman
org.jmol.export.image.
ImageCreator
(implements org.jmol.api.
JmolImageCreatorInterface
)
org.jmol.export.image.
ImageEncoder
(implements java.awt.image.ImageConsumer)
org.jmol.export.image.
GifEncoder
org.jmol.export.image.
PpmEncoder
org.jmol.export.image.
ImageSelection
(implements java.awt.datatransfer.Transferable)
java.io.InputStream (implements java.io.Closeable)
java.io.FilterInputStream
org.openscience.jvxl.
MonitorInputStream
org.jmol.util.
Int2IntHash
org.jmol.util.
Int2IntHash.Entry
org.jmol.api.
Interface
org.jmol.applet.
Jmol
(implements org.jmol.appletwrapper.
WrappedApplet
)
org.jmol.applet.
Jmol.MyStatusListener
(implements org.jmol.api.
JmolStatusListener
)
org.jmol.api.
JmolAdapter
org.jmol.adapter.smarter.
SmarterJmolAdapter
org.jmol.api.
JmolAdapter.AtomIterator
org.jmol.adapter.smarter.
SmarterJmolAdapter.AtomIterator
org.jmol.api.
JmolAdapter.BondIterator
org.jmol.adapter.smarter.
SmarterJmolAdapter.BondIterator
org.jmol.api.
JmolAdapter.StructureIterator
org.jmol.adapter.smarter.
SmarterJmolAdapter.StructureIterator
org.openscience.jmol.app.
JmolApp
org.jmol.applet.
JmolAppletRegistry
org.jmol.console.
JmolConsole.FileChecker
(implements java.io.FilenameFilter)
org.jmol.viewer.
JmolConstants
org.openscience.jmol.app.
JmolData
org.jmol.export.
JmolFileDropper
(implements java.awt.dnd.DropTargetListener)
org.openscience.jmol.app.webexport.
JmolInstance
org.jmol.api.
JmolMolecule
org.jmol.smiles.
SmilesSearch
org.jmol.multitouch.
JmolMultiTouchClientAdapter
(implements org.jmol.multitouch.
JmolMultiTouchAdapter
)
org.jmol.multitouch.jni.
JmolJniClientAdapter
(implements org.jmol.multitouch.
JmolMultiTouchAdapter
)
org.jmol.multitouch.sparshui.
JmolSparshClientAdapter
(implements com.sparshui.client.SparshClient)
org.openscience.jmol.app.jmolpanel.
JmolPanel.ActionChangedListener
(implements java.beans.PropertyChangeListener)
org.openscience.jmol.app.jmolpanel.
JmolResourceHandler
org.jmol.api.
JmolSimpleViewer
org.jmol.api.
JmolViewer
org.jmol.viewer.
Viewer
(implements org.jmol.atomdata.
AtomDataServer
)
org.jmol.util.
JpegInfo
org.openscience.jvxl.
Jvxl
org.jmol.jvxl.data.
JvxlCoder
org.jmol.jvxl.data.
JvxlData
org.openscience.jvxl.simplewriter.
JvxlWrite
org.jmol.util.
KfDocument
org.jmol.modelset.
LabelToken
org.jmol.adapter.smarter.
LimitedLineReader
org.jmol.util.
LimitedLineReader
org.jmol.g3d.
Line3D
org.jmol.util.
Logger
org.openscience.jmol.app.webexport.
LogPanel
org.openscience.jmol.app.jmolpanel.
LoopedStreams
org.jmol.jvxl.calc.
MarchingSquares
org.jmol.jvxl.calc.
MarchingSquares.Triangle
javax.vecmath.Matrix4f (implements java.lang.Cloneable, java.io.Serializable)
org.jmol.symmetry.
SymmetryOperation
org.jmol.util.
Measure
org.jmol.modelset.
Measurement
org.jmol.modelset.
MeasurementPending
org.jmol.modelset.
MeasurementData
(implements org.jmol.api.
JmolMeasurementClient
)
org.jmol.jvxl.data.
MeshData.SortSet
(implements java.util.Comparator<T>)
org.jmol.jvxl.data.
MeshData.SSet
org.jmol.util.
MeshSurface
org.jmol.shape.
Mesh
org.jmol.shapespecial.
DrawMesh
org.jmol.shapesurface.
IsosurfaceMesh
org.jmol.jvxl.data.
MeshData
org.jmol.minimize.
MinAtom
org.jmol.minimize.
MinBond
org.jmol.minimize.
Minimizer
(implements org.jmol.api.
MinimizerInterface
)
org.jmol.modelset.
Model
org.jmol.modelset.
ModelCollection.StateScript
org.jmol.viewer.
ModelManager
org.jmol.viewer.
MouseManager14
(implements java.awt.event.KeyListener, java.awt.event.MouseListener, java.awt.event.MouseMotionListener, java.awt.event.MouseWheelListener)
org.jmol.g3d.
Normix3D
org.jmol.shape.
Object2d
org.jmol.shape.
Text
org.jmol.util.
OutputStringBuffer
org.jmol.script.
ParallelProcessor.Process
org.jmol.script.
ParallelProcessor.RunProcess
(implements java.lang.Runnable)
org.jmol.jvxl.readers.
Parameters
org.jmol.util.
Parser
org.openscience.jmol.app.jmolpanel.
PdfCreator
(implements org.jmol.api.
JmolPdfCreatorInterface
)
org.jmol.g3d.
Platform3D
org.jmol.export.image.
PngEncoder
org.jmol.symmetry.
PointGroup
org.jmol.symmetry.
PointGroup.Operation
org.jmol.shapespecial.
Polyhedra.Polyhedron
org.jmol.modelset.
Polymer
org.jmol.modelsetbio.
BioPolymer
org.jmol.modelsetbio.
AlphaPolymer
org.jmol.modelsetbio.
AminoPolymer
org.jmol.modelsetbio.
CarbohydratePolymer
org.jmol.modelsetbio.
NucleicPolymer
org.jmol.modelsetbio.
PhosphorusPolymer
org.jmol.popup.
PopupResource
org.jmol.popup.
MainPopupResourceBundle
org.jmol.modelkit.
ModelKitPopupResourceBundle
org.jmol.viewer.
PropertyManager
org.jmol.modelsetbio.
ProteinStructure
org.jmol.modelsetbio.
Helix
org.jmol.modelsetbio.
Sheet
org.jmol.modelsetbio.
Turn
org.jmol.adapter.readers.quantum.
QchemReader.MOInfo
org.jmol.util.
Quadric
org.jmol.quantum.
QuantumCalculation
org.jmol.quantum.
MepCalculation
(implements org.jmol.api.
MepCalculationInterface
)
org.jmol.quantum.
MlpCalculation
org.jmol.quantum.
MOCalculation
(implements org.jmol.api.
MOCalculationInterface
)
org.jmol.util.
Quaternion
org.jmol.atomdata.
RadiusData
java.io.Reader (implements java.io.Closeable, java.lang.Readable)
java.io.BufferedReader
org.jmol.viewer.
FileManager.DataReader
org.jmol.viewer.
FileManager.ArrayDataReader
org.jmol.viewer.
FileManager.StringDataReader
org.jmol.viewer.
FileManager.VectorDataReader
org.jmol.viewer.
RepaintManager
org.jmol.adapter.smarter.
Resolver
org.jmol.modelsetbio.
Resolver
(implements org.jmol.api.
JmolBioResolver
)
org.jmol.g3d.
Rgb16
org.jmol.symmetry.
Rotation
org.jmol.script.
ScriptCompilationTokenParser
org.jmol.script.
ScriptCompiler
org.jmol.script.
ScriptContext
org.jmol.console.
ScriptEditor.EditorDocument.MyUndoableEditListener
(implements javax.swing.event.UndoableEditListener)
org.jmol.script.
ScriptEvaluator
org.jmol.script.
ScriptFlowContext
org.jmol.script.
ScriptFunction
org.jmol.script.
ParallelProcessor
org.jmol.viewer.
ScriptManager
org.jmol.viewer.
ScriptManager.CommandWatcher
(implements java.lang.Runnable)
org.jmol.viewer.
ScriptManager.ScriptQueueRunnable
(implements java.lang.Runnable)
org.jmol.script.
ScriptMathProcessor
org.jmol.script.
ScriptVariable.Sort
(implements java.util.Comparator<T>)
org.jmol.viewer.
SelectionManager
org.jmol.g3d.
Shade3D
org.jmol.shape.
Shape
org.jmol.shape.
AtomShape
org.jmol.shape.
Balls
org.jmol.shapespecial.
Dots
org.jmol.shapespecial.
GeoSurface
org.jmol.shapespecial.
Ellipsoids
org.jmol.shape.
Halos
org.jmol.shape.
Labels
org.jmol.shapespecial.
Polyhedra
org.jmol.shape.
Stars
org.jmol.shapespecial.
Vectors
org.jmol.shapebio.
BioShapeCollection
org.jmol.shapebio.
Backbone
org.jmol.shapebio.
Ribbons
org.jmol.shapebio.
Rockets
org.jmol.shapebio.
Cartoon
org.jmol.shapebio.
Strands
org.jmol.shapebio.
MeshRibbon
org.jmol.shapebio.
Trace
org.jmol.shapespecial.
Dipoles
org.jmol.shape.
FontShape
org.jmol.shape.
FontLineShape
org.jmol.shape.
Axes
org.jmol.shape.
Bbcage
org.jmol.shape.
Uccage
org.jmol.shape.
Frank
org.jmol.shape.
Measures
(implements org.jmol.api.
JmolMeasurementClient
)
org.jmol.shape.
MeshCollection
org.jmol.shapespecial.
Draw
org.jmol.shapesurface.
Isosurface
(implements org.jmol.jvxl.api.
MeshDataServer
)
org.jmol.shapesurface.
LcaoCartoon
org.jmol.shapesurface.
MolecularOrbital
org.jmol.shapesurface.
Pmesh
org.jmol.shapesurface.
Plot3D
org.jmol.shape.
Object2dShape
org.jmol.shape.
TextShape
org.jmol.shape.
Echo
org.jmol.shape.
Hover
org.jmol.shape.
Sticks
org.jmol.viewer.
ShapeManager
org.jmol.shape.
ShapeRenderer
org.jmol.shape.
BallsRenderer
org.jmol.shapespecial.
DipolesRenderer
org.jmol.shapespecial.
DotsRenderer
org.jmol.shapespecial.
GeoSurfaceRenderer
org.jmol.shape.
EchoRenderer
org.jmol.shapespecial.
EllipsoidsRenderer
org.jmol.shape.
FontLineShapeRenderer
org.jmol.shape.
AxesRenderer
org.jmol.shape.
CageRenderer
org.jmol.shape.
BbcageRenderer
org.jmol.shape.
UccageRenderer
org.jmol.shape.
MeasuresRenderer
org.jmol.shape.
FrankRenderer
org.jmol.shape.
HalosRenderer
org.jmol.shape.
HoverRenderer
org.jmol.shape.
LabelsRenderer
org.jmol.shape.
MeshRenderer
org.jmol.shapebio.
BioShapeRenderer
org.jmol.shapebio.
BackboneRenderer
org.jmol.shapebio.
RocketsRenderer
org.jmol.shapebio.
CartoonRenderer
org.jmol.shapebio.
StrandsRenderer
org.jmol.shapebio.
MeshRibbonRenderer
org.jmol.shapebio.
RibbonsRenderer
org.jmol.shapebio.
TraceRenderer
org.jmol.shapespecial.
DrawRenderer
org.jmol.shapesurface.
IsosurfaceRenderer
org.jmol.shapesurface.
LcaoCartoonRenderer
org.jmol.shapesurface.
MolecularOrbitalRenderer
org.jmol.shapesurface.
PmeshRenderer
org.jmol.shapesurface.
Plot3DRenderer
org.jmol.shapespecial.
PolyhedraRenderer
org.jmol.shape.
StarsRenderer
org.jmol.shape.
SticksRenderer
org.jmol.shapespecial.
VectorsRenderer
org.openscience.jvxl.simplewriter.
SimpleMarchingCubesOld
org.jmol.popup.
SimplePopup
org.jmol.popup.
JmolPopup
org.jmol.modelkit.
ModelKitPopup
org.jmol.popup.
SimplePopup.CheckboxMenuItemListener
(implements java.awt.event.ItemListener)
org.jmol.popup.
SimplePopup.MenuItemListener
(implements java.awt.event.ActionListener)
org.jmol.util.
SimpleUnitCell
org.jmol.symmetry.
UnitCell
org.jmol.multitouch.sparshui.
SinglePointGesture
(implements com.sparshui.gestures.Gesture)
org.jmol.quantum.
SlaterData
org.jmol.adapter.readers.quantum.
SlaterReader.OrbitalSorter
(implements java.util.Comparator<T>)
org.jmol.adapter.readers.quantum.
SlaterReader.SlaterSorter
(implements java.util.Comparator<T>)
org.jmol.util.
SlowBitSet
org.jmol.smiles.
SmilesAromatic
org.jmol.smiles.
SmilesBond
(implements org.jmol.api.
JmolEdge
)
org.jmol.smiles.
SmilesGenerator
org.jmol.smiles.
SmilesMatcher
(implements org.jmol.api.
SmilesMatcherInterface
)
org.jmol.smiles.
SmilesMeasure
org.jmol.smiles.
SmilesParser
org.jmol.smiles.
SmilesSearch.VTemp
org.jmol.symmetry.
SpaceGroup
org.jmol.adapter.readers.quantum.
SpartanArchive
org.jmol.g3d.
Sphere3D
org.jmol.viewer.
StateManager
org.jmol.viewer.
StateManager.Connection
org.jmol.viewer.
StateManager.Connections
org.jmol.viewer.
StateManager.GlobalSettings
org.jmol.viewer.
StateManager.Orientation
org.openscience.jmol.app.jmolpanel.
StatusListener
(implements org.jmol.api.
JmolStatusListener
)
org.jmol.viewer.
StatusManager
org.jmol.adapter.smarter.
Structure
org.jmol.util.
SurfaceFileTyper
org.jmol.jvxl.readers.
SurfaceGenerator
org.jmol.jvxl.readers.
SurfaceReader
(implements org.jmol.jvxl.api.
VertexDataServer
)
org.jmol.jvxl.readers.
SurfaceFileReader
org.jmol.jvxl.readers.
PolygonFileReader
org.jmol.jvxl.readers.
EfvetReader
org.jmol.jvxl.readers.
PmeshReader
org.jmol.jvxl.readers.
ObjReader
org.jmol.jvxl.readers.
VolumeFileReader
org.jmol.jvxl.readers.
ApbsReader
org.jmol.jvxl.readers.
CubeReader
org.jmol.jvxl.readers.
JaguarReader
org.jmol.jvxl.readers.
JvxlXmlReader
org.jmol.jvxl.readers.
JvxlReader
org.jmol.jvxl.readers.
MapFileReader
org.jmol.jvxl.readers.
Dsn6BinaryReader
org.jmol.jvxl.readers.
MrcBinaryReader
org.jmol.jvxl.readers.
XplorReader
org.jmol.jvxl.readers.
PltFormattedReader
org.jmol.jvxl.readers.
VolumeDataReader
org.jmol.jvxl.readers.
AtomDataReader
org.jmol.jvxl.readers.
AtomPropertyMapper
org.jmol.jvxl.readers.
IsoMepReader
org.jmol.jvxl.readers.
IsoMlpReader
org.jmol.jvxl.readers.
IsoMOReader
org.jmol.jvxl.readers.
IsoPlaneReader
org.jmol.jvxl.readers.
IsoSolventReader
org.jmol.jvxl.readers.
IsoFxyReader
org.jmol.jvxl.readers.
IsoFxyzReader
org.jmol.jvxl.readers.
IsoShapeReader
org.jmol.symmetry.
Symmetry
(implements org.jmol.api.
SymmetryInterface
)
org.jmol.symmetry.
SymmetryInfo
org.jmol.util.
TempArray
org.jmol.g3d.
Text3D
org.jmol.util.
TextFormat
java.lang.Thread (implements java.lang.Runnable)
org.jmol.viewer.
ActionManager.TimeoutThread
org.jmol.viewer.
AnimationManager.AnimationThread
(implements java.lang.Runnable)
org.openscience.jmol.app.jmolpanel.
AppConsole.ExecuteCommandThread
org.jmol.appletwrapper.
ClassPreloader
org.jmol.minimize.
Minimizer.MinimizationThread
(implements java.lang.Runnable)
org.jmol.g3d.
Platform3D.ClearingThread
(implements java.lang.Runnable)
org.jmol.appletwrapper.
TickerThread
org.jmol.viewer.
TransformManager.MotionThread
(implements java.lang.Runnable)
org.jmol.viewer.
TransformManager.SpinThread
(implements java.lang.Runnable)
org.jmol.viewer.
TransformManager.VibrationThread
(implements java.lang.Runnable)
org.jmol.appletwrapper.
WrappedAppletLoader
java.lang.Throwable (implements java.io.Serializable)
java.lang.Exception
org.jmol.smiles.
InvalidSmilesException
org.jmol.script.
ScriptEvaluator.ScriptException
org.jmol.modelset.
TickInfo
org.jmol.script.
Token
org.jmol.script.
ContextToken
org.jmol.script.
ScriptVariable
javax.swing.TransferHandler (implements java.io.Serializable)
org.openscience.jmol.app.webexport.
ArrayListTransferHandler
org.jmol.viewer.
TransformManager
org.jmol.viewer.
TransformManager10
org.jmol.viewer.
TransformManager11
org.jmol.symmetry.
Translation
org.jmol.g3d.
Triangle3D
org.jmol.util.
TriangleData
org.jmol.jvxl.calc.
MarchingCubes
org.openscience.jvxl.simplewriter.
SimpleMarchingCubes
javax.vecmath.Tuple3f (implements java.lang.Cloneable, java.io.Serializable)
javax.vecmath.Point3f (implements java.io.Serializable)
org.jmol.adapter.smarter.
Atom
(implements java.lang.Cloneable)
org.jmol.jvxl.calc.
MarchingSquares.ContourVertex
org.jmol.util.
Point3fi
org.jmol.modelset.
Atom
(implements org.jmol.api.
JmolNode
)
org.jmol.quantum.
QuantumCalculation.QMAtom
org.jmol.smiles.
SmilesAtom
(implements org.jmol.api.
JmolNode
)
org.jmol.multitouch.sparshui.
TwoPointGesture
(implements com.sparshui.gestures.Gesture)
org.jmol.minimize.
Util
org.jmol.jvxl.data.
VolumeData
(implements org.jmol.api.
VolumeDataInterface
)
org.openscience.jvxl.simplewriter.
VoxelDataCreator
org.openscience.jmol.app.jmolpanel.
WhatsNewDialog.PageLoader
(implements java.lang.Runnable)
org.openscience.jmol.app.webexport.
Widgets
org.openscience.jmol.app.webexport.
Widgets.Widget
org.openscience.jmol.app.webexport.
Widgets.AnimationWidget
org.openscience.jmol.app.webexport.
Widgets.BackgroundColorWidget
org.openscience.jmol.app.webexport.
Widgets.ConsoleWidget
org.openscience.jmol.app.webexport.
Widgets.DownLoadWidget
org.openscience.jmol.app.webexport.
Widgets.SpinOnWidget
org.openscience.jmol.app.webexport.
Widgets.StereoViewWidget
java.awt.event.WindowAdapter (implements java.awt.event.WindowFocusListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
org.openscience.jmol.app.jmolpanel.
JmolPanel.AppCloser
org.openscience.jmol.app.jmolpanel.
MeasurementTable.MeasurementListWindowListener
org.openscience.jmol.app.jmolpanel.
PovrayDialog.PovrayWindowListener
org.openscience.jmol.app.jmolpanel.
Splash.WindowListener
org.jmol.util.
XmlReader
org.jmol.adapter.readers.xml.
XmlReader.DummyResolver
(implements org.xml.sax.EntityResolver)
org.jmol.util.
XmlUtil
org.jmol.util.
ZipUtil
Interface Hierarchy
org.jmol.applet.
AppletConsole.GetKey
org.jmol.atomdata.
AtomDataServer
org.jmol.api.
AtomIndexIterator
org.jmol.modelset.
BondIterator
org.openscience.jmol.app.jmolpanel.
EnterListener
org.openscience.jmol.app.jmolpanel.
GuiMap.GetKey
org.jmol.api.
JmolAppConsoleInterface
org.jmol.api.
JmolAppletInterface
org.jmol.appletwrapper.
WrappedApplet
org.jmol.api.
JmolBioResolver
org.jmol.api.
JmolCallbackListener
org.jmol.api.
JmolStatusListener
org.jmol.api.
JmolDialogInterface
org.jmol.api.
JmolEdge
org.jmol.api.
JmolFileReaderInterface
org.jmol.api.
JmolFrame
org.jmol.api.
JmolGestureServerInterface
org.jmol.api.
JmolImageCreatorInterface
org.jmol.api.
JmolLineReader
org.jmol.api.
JmolMeasurementClient
org.jmol.api.
JmolModelKitInterface
org.jmol.api.
JmolMovieCreatorInterface
org.jmol.multitouch.
JmolMultiTouchAdapter
org.jmol.multitouch.
JmolMultiTouchClient
org.jmol.api.
JmolNode
org.jmol.api.
JmolPdfCreatorInterface
org.jmol.api.
JmolRendererInterface
org.jmol.api.
JmolScriptEditorInterface
org.jmol.api.
JmolSelectionListener
org.jmol.api.
JmolTouchSimulatorInterface
org.jmol.util.
LoggerInterface
org.jmol.api.
MepCalculationInterface
org.jmol.api.
MinimizerInterface
org.jmol.api.
MOCalculationInterface
org.jmol.api.
SmilesMatcherInterface
org.openscience.jmol.app.
SplashInterface
org.jmol.api.
SymmetryInterface
org.jmol.jvxl.api.
VertexDataServer
org.jmol.jvxl.api.
MeshDataServer
org.jmol.api.
VolumeDataInterface
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